Click here to close now.

Welcome!

Open Source Cloud Authors: Pat Romanski, Elizabeth White, Adrian Bridgwater, Liz McMillan, Carmen Gonzalez

Related Topics: @BigDataExpo, Java IoT, Open Source Cloud, Containers Expo, Server Monitoring, @CloudExpo

@BigDataExpo: Blog Feed Post

Big Data – Storage Mediums and Data Structures

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

My working title was Big Data, Storage Dilemma.

They say dilemma. I say dilemna. I'm serious. I spell it dilemna.

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

Should different data structures be persisted to different storage mediums?

Storage Medium
Identifying the appropriate medium is a function of performance, cost, and capacity.

Random Access Memory
It's fast. Very. It's expense. Very.

If we are configuring an HP DL980 G7 server, it will cost $3,672 for 128GB of memory with 8x 16GB modules or $9,996 for 128GB of memory with 4x 32GB modules. That is $28-78 / GB.

We can configure an HP DL980 G7 server with up to 4TB of memory.

Solid State Drive
It's not as fast or as expensive as random access memory. It's faster than a hard disk drive. A lot faster. It's more expensive than a hard disk drive. A lot more expensive.

If we are configuring an HP DL980 G7 server, it will cost $4,199 for a 400GB SAS MLC drive or $7,419 for a 400GB SAS SLC drive. That is $10-18 / GB. It's a performance / size trade-off. While SLC drives often perform better, MLC drives are often available in larger sizes. Further, the read / write performance is either symmetric or asymmetric.

That, and SLC drives often have greater endurance.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 520 (480GB) 550 520 50,000 50,000
Intel 520 (240GB) 550 520 50,000 80,000
Intel DC S3700 500 460 75,000 36,000

The performance of solid state drives can vary:

  • consumer / enterprise
  • MLC / eMLC / SLC
  • SATA / SAS / PCIe

The capacity of enterprise solid state drives is often less than that of enterprise hard disk drives (4TB). However, the capacity of PCIe drives such as the Fusion-io ioDrive Octal (5.12TB / 10.24TB) is greater than that of enterprise hard disk drives (4TB). In addition, the performance of PCIe drives is greater than that of SAS or SATA drives.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 910 (800GB) 2,000 1,000 180,000 75,000

Hard Disk Drive

It may not be fast, but it is inexpensive.

If we are configuring an HP DL980 G7 server, it will cost $309 for a 300GB 10K drive or $649 for a 300GB 15K drive. That is $1-2 / GB. It's a performance / size trade-off. While a 15K drive will perform better than a 10K drive, it will often have less capacity. The sequential read / write performance of hard disk drives is often between 150-200MB/s. As such, a RAID configuration may be a cost effective alternative to a single solid state drive for sequential read / write access.

The capacity of enterprise hard disk drives (4TB) is often greater than that of enterprise solid state drives.

Data Structure
Hash Table

JBoss Data Grid is an in-memory data grid with the data stored in a hash table. However, JBoss Data Grid supports persistence via write-behind or write-through. For all intents and purposes (e.g. map / reduce), all of the data should fit in memory.

Access

  • Random Reads, Random Writes

Riak is a key / value store. If persistence has been configured with Bitcast, the data is stored in a log structured hash table. An in-memory hash table contains the key / value pointers. The value is a pointer to the data. As such, all of the key / value pointers must fit in memory. The data is persisted via append only log files.

Access

  • Complex Index in Memory
  • Random Reads, Sequential Writes

Point queries perform well in hash tables. Range queries do not. Though there is always map / reduce.

B-Tree
MongoDB is a document database with the data stored in a B-Tree. The data is persisted via memory mapped files.

Access

  • Partial Index (Internal Nodes) in Memory
  • Random Reads, Sequential Reads, Random Writes

CouchDB is a document database with the data stored in a B+Tree. The data is persisted via append only log files.

Access

  • Partial Index in Memory
  • Random Reads, Sequential Reads, Sequential Writes

In a B+ Tree, the data is only stored in the leaf nodes. In a B-Tree, the data is stored in both the internal nodes and the leaf nodes. The advantage of a B+ Tree is that the leaf nodes are linked. As a result, range queries perform better with a B+ Tree. However, point queries perform better with a B-Tree.

CouchDB has implemented an append only B+ Tree. An alternative is the copy-on-write (CoW) B+ Tree. A write optimization for a B-Tree is buffering. First, the data written to an internal buffer in an internal node. Second, the buffer is flushed to a leaf node. As a result, random writes are turned in to sequential writes. The cost of random writes is thus amortized.  However, I am not aware of any open source data stores that have implemented a CoW B+ Tree or have implemented buffering with a B-Tree.

Range queries perform well with a B/B+ Tree. Point queries, not as well as hash tables.

Log Structured Merge Tree
Apache HBase and Apache Cassandra are both column oriented data stores, and they have both store data in an LSM-Tree. Apache HBase has implemented a cache oblivious lookahead array (COLA). Apache Cassandra has implemented a sorted array merge tree (SAMT).

In both implementations, a write is first written to a write-ahead log. Next, it is written to a memtable. A memtable is an in-memory sorted string table (SSTable). Later, the memtable is flushed and persisted as an SSTable. As result, random writes are turned in to sequential writes. However, a point query with an LSM-Tree may require multiple random reads.

Apache HBase implemented a single-level index with HFile version 1. However, because every index was cached, it resulted in high memory usage.

Apache HBase implemented a multi-level index a la a B+ Tree with HFile (SSTable) version 2. The SSTable contains a root index, a root index with leaf indexes, or a root index with an intermediate index and leaf indexes. The root index is stored in memory. The intermediate and leaf indexes may be stored in the block cache. In addition, the SSTable contains a compound (block level) bloom filter. The bloom filter is used to determine if the data is not in the data block.

Recommendation / Access

  • Partial Index / Bloom Filter in Memory
  • Random Reads, Sequential Reads, Sequential Writes

A read optimization for an LSM-Tree is fractional cascading. The idea is that each level contains both data and pointers to data in the next level. However, I am not aware of any open source data stores that have implemented fractional cascading.

I like the idea of a hybrid / tiered storage solution for an LSM-Tree implementation with the first level in memory, second level on solid state drives, and third level on hard disk drives. I've seen this solution described in academia, but I am not aware of any open source implementations.

Conclusion
I find it interesting that key / value stores often store data in a hash table, that document stores often store data in a B+/B-Tree, and that column oriented stores often store data in an LSM-Tree. Perhaps it is because key / value stores focus on the performance of point queries, document stores support secondary indexes (MongoDB) / views  (CouchDB), and column oriented stores support range queries. Perhaps it because document stores were not created with distribution (shards / partitions) in mind and thus assume that the complete index can not be stored in memory.

Notes
I found this paper to be very helpful in examining data structures as it covers most of the ones highlighted in this post:

Efficient, Scalable, and Versatile Application and System Transaction Management for Direct Storage Layers (link)

Read the original blog entry...

More Stories By Daniel Thompson

I curate the content on this page, but the credit goes to my talented colleagues for the posts that you see here. Much of what you read on this page is the work of friends at How to JBoss, and I encourage you to drop by the site at http://www.howtojboss.com for some of the best JBoss technical and non-technical content for developers, architects and technology executives on the Web.

@ThingsExpo Stories
The basic integration architecture, as defined by ESBs, hasn’t changed for more than a decade. Most cloud integration providers still rely on an ESB architecture and their proprietary connectors. As a result, enterprise integration projects suffer from constraints of availability and reliability of these connectors that are not re-usable across other integration vendors. However, the rapid adoption of APIs and almost ubiquitous availability of APIs amongst most SaaS and Cloud applications are rapidly redefining traditional integration approaches and their reliance on proprietary connectors. ...
The Internet of Things is not only adding billions of sensors and billions of terabytes to the Internet. It is also forcing a fundamental change in the way we envision Information Technology. For the first time, more data is being created by devices at the edge of the Internet rather than from centralized systems. What does this mean for today's IT professional? In this Power Panel at @ThingsExpo, moderated by Conference Chair Roger Strukhoff, panelists addressed this very serious issue of profound change in the industry.
Internet of Things is moving from being a hype to a reality. Experts estimate that internet connected cars will grow to 152 million, while over 100 million internet connected wireless light bulbs and lamps will be operational by 2020. These and many other intriguing statistics highlight the importance of Internet powered devices and how market penetration is going to multiply many times over in the next few years.
Today air travel is a minefield of delays, hassles and customer disappointment. Airlines struggle to revitalize the experience. GE and M2Mi will demonstrate practical examples of how IoT solutions are helping airlines bring back personalization, reduce trip time and improve reliability. In their session at @ThingsExpo, Shyam Varan Nath, Principal Architect with GE, and Dr. Sarah Cooper, M2Mi’s VP Business Development and Engineering, will explore the IoT cloud-based platform technologies driving this change including privacy controls, data transparency and integration of real time context wi...
Internet of Things (IoT) will be a hybrid ecosystem of diverse devices and sensors collaborating with operational and enterprise systems to create the next big application. In their session at @ThingsExpo, Bramh Gupta, founder and CEO of robomq.io, and Fred Yatzeck, principal architect leading product development at robomq.io, discussed how choosing the right middleware and integration strategy from the get-go will enable IoT solution developers to adapt and grow with the industry, while at the same time reduce Time to Market (TTM) by using plug and play capabilities offered by a robust IoT ...
"We have a tagline - "Power in the API Economy." What that means is everything that is built in applications and connected applications is done through APIs," explained Roberto Medrano, Executive Vice President at Akana, in this SYS-CON.tv interview at 16th Cloud Expo, held June 9-11, 2015, at the Javits Center in New York City.
Explosive growth in connected devices. Enormous amounts of data for collection and analysis. Critical use of data for split-second decision making and actionable information. All three are factors in making the Internet of Things a reality. Yet, any one factor would have an IT organization pondering its infrastructure strategy. How should your organization enhance its IT framework to enable an Internet of Things implementation? In his session at @ThingsExpo, James Kirkland, Red Hat's Chief Architect for the Internet of Things and Intelligent Systems, described how to revolutionize your archit...
WebRTC converts the entire network into a ubiquitous communications cloud thereby connecting anytime, anywhere through any point. In his session at WebRTC Summit,, Mark Castleman, EIR at Bell Labs and Head of Future X Labs, will discuss how the transformational nature of communications is achieved through the democratizing force of WebRTC. WebRTC is doing for voice what HTML did for web content.
It is one thing to build single industrial IoT applications, but what will it take to build the Smart Cities and truly society-changing applications of the future? The technology won’t be the problem, it will be the number of parties that need to work together and be aligned in their motivation to succeed. In his session at @ThingsExpo, Jason Mondanaro, Director, Product Management at Metanga, discussed how you can plan to cooperate, partner, and form lasting all-star teams to change the world and it starts with business models and monetization strategies.
To many people, IoT is a buzzword whose value is not understood. Many people think IoT is all about wearables and home automation. In his session at @ThingsExpo, Mike Kavis, Vice President & Principal Cloud Architect at Cloud Technology Partners, discussed some incredible game-changing use cases and how they are transforming industries like agriculture, manufacturing, health care, and smart cities. He will discuss cool technologies like smart dust, robotics, smart labels, and much more. Prepare to be blown away with a glimpse of the future.
SYS-CON Events announced today that BMC will exhibit at SYS-CON's 16th International Cloud Expo®, which will take place on June 9-11, 2015, at the Javits Center in New York City, NY. BMC delivers software solutions that help IT transform digital enterprises for the ultimate competitive business advantage. BMC has worked with thousands of leading companies to create and deliver powerful IT management services. From mainframe to cloud to mobile, BMC pairs high-speed digital innovation with robust IT industrialization – allowing customers to provide amazing user experiences with optimized IT per...
There will be 150 billion connected devices by 2020. New digital businesses have already disrupted value chains across every industry. APIs are at the center of the digital business. You need to understand what assets you have that can be exposed digitally, what their digital value chain is, and how to create an effective business model around that value chain to compete in this economy. No enterprise can be complacent and not engage in the digital economy. Learn how to be the disruptor and not the disruptee.
The Internet of Things is not only adding billions of sensors and billions of terabytes to the Internet. It is also forcing a fundamental change in the way we envision Information Technology. For the first time, more data is being created by devices at the edge of the Internet rather than from centralized systems. What does this mean for today's IT professional? In this Power Panel at @ThingsExpo, moderated by Conference Chair Roger Strukhoff, panelists will addresses this very serious issue of profound change in the industry.
Business as usual for IT is evolving into a "Make or Buy" decision on a service-by-service conversation with input from the LOBs. How does your organization move forward with cloud? In his general session at 16th Cloud Expo, Paul Maravei, Regional Sales Manager, Hybrid Cloud and Managed Services at Cisco, discusses how Cisco and its partners offer a market-leading portfolio and ecosystem of cloud infrastructure and application services that allow you to uniquely and securely combine cloud business applications and services across multiple cloud delivery models.
In his General Session at 16th Cloud Expo, David Shacochis, host of The Hybrid IT Files podcast and Vice President at CenturyLink, investigated three key trends of the “gigabit economy" though the story of a Fortune 500 communications company in transformation. Narrating how multi-modal hybrid IT, service automation, and agile delivery all intersect, he will cover the role of storytelling and empathy in achieving strategic alignment between the enterprise and its information technology.
Buzzword alert: Microservices and IoT at a DevOps conference? What could possibly go wrong? In this Power Panel at DevOps Summit, moderated by Jason Bloomberg, the leading expert on architecting agility for the enterprise and president of Intellyx, panelists peeled away the buzz and discuss the important architectural principles behind implementing IoT solutions for the enterprise. As remote IoT devices and sensors become increasingly intelligent, they become part of our distributed cloud environment, and we must architect and code accordingly. At the very least, you'll have no problem fillin...
Growth hacking is common for startups to make unheard-of progress in building their business. Career Hacks can help Geek Girls and those who support them (yes, that's you too, Dad!) to excel in this typically male-dominated world. Get ready to learn the facts: Is there a bias against women in the tech / developer communities? Why are women 50% of the workforce, but hold only 24% of the STEM or IT positions? Some beginnings of what to do about it! In her Opening Keynote at 16th Cloud Expo, Sandy Carter, IBM General Manager Cloud Ecosystem and Developers, and a Social Business Evangelist, d...
Converging digital disruptions is creating a major sea change - Cisco calls this the Internet of Everything (IoE). IoE is the network connection of People, Process, Data and Things, fueled by Cloud, Mobile, Social, Analytics and Security, and it represents a $19Trillion value-at-stake over the next 10 years. In her keynote at @ThingsExpo, Manjula Talreja, VP of Cisco Consulting Services, discussed IoE and the enormous opportunities it provides to public and private firms alike. She will share what businesses must do to thrive in the IoE economy, citing examples from several industry sectors.
In his keynote at 16th Cloud Expo, Rodney Rogers, CEO of Virtustream, discussed the evolution of the company from inception to its recent acquisition by EMC – including personal insights, lessons learned (and some WTF moments) along the way. Learn how Virtustream’s unique approach of combining the economics and elasticity of the consumer cloud model with proper performance, application automation and security into a platform became a breakout success with enterprise customers and a natural fit for the EMC Federation.
SYS-CON Events announced today that the "Second Containers & Microservices Conference" will take place November 3-5, 2015, at the Santa Clara Convention Center, Santa Clara, CA, and the “Third Containers & Microservices Conference” will take place June 7-9, 2016, at Javits Center in New York City. Containers and microservices have become topics of intense interest throughout the cloud developer and enterprise IT communities.