Click here to close now.

Welcome!

Open Source Cloud Authors: Elizabeth White, Carmen Gonzalez, Liz McMillan, Pat Romanski, Ruxit Blog

Related Topics: BigDataExpo® Blog, Java IoT, Open Source Cloud, @ContainersExpo Blog, Server Monitoring, CloudExpo® Blog

BigDataExpo® Blog: Blog Feed Post

Big Data – Storage Mediums and Data Structures

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

My working title was Big Data, Storage Dilemma.

They say dilemma. I say dilemna. I'm serious. I spell it dilemna.

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

Should different data structures be persisted to different storage mediums?

Storage Medium
Identifying the appropriate medium is a function of performance, cost, and capacity.

Random Access Memory
It's fast. Very. It's expense. Very.

If we are configuring an HP DL980 G7 server, it will cost $3,672 for 128GB of memory with 8x 16GB modules or $9,996 for 128GB of memory with 4x 32GB modules. That is $28-78 / GB.

We can configure an HP DL980 G7 server with up to 4TB of memory.

Solid State Drive
It's not as fast or as expensive as random access memory. It's faster than a hard disk drive. A lot faster. It's more expensive than a hard disk drive. A lot more expensive.

If we are configuring an HP DL980 G7 server, it will cost $4,199 for a 400GB SAS MLC drive or $7,419 for a 400GB SAS SLC drive. That is $10-18 / GB. It's a performance / size trade-off. While SLC drives often perform better, MLC drives are often available in larger sizes. Further, the read / write performance is either symmetric or asymmetric.

That, and SLC drives often have greater endurance.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 520 (480GB) 550 520 50,000 50,000
Intel 520 (240GB) 550 520 50,000 80,000
Intel DC S3700 500 460 75,000 36,000

The performance of solid state drives can vary:

  • consumer / enterprise
  • MLC / eMLC / SLC
  • SATA / SAS / PCIe

The capacity of enterprise solid state drives is often less than that of enterprise hard disk drives (4TB). However, the capacity of PCIe drives such as the Fusion-io ioDrive Octal (5.12TB / 10.24TB) is greater than that of enterprise hard disk drives (4TB). In addition, the performance of PCIe drives is greater than that of SAS or SATA drives.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 910 (800GB) 2,000 1,000 180,000 75,000

Hard Disk Drive

It may not be fast, but it is inexpensive.

If we are configuring an HP DL980 G7 server, it will cost $309 for a 300GB 10K drive or $649 for a 300GB 15K drive. That is $1-2 / GB. It's a performance / size trade-off. While a 15K drive will perform better than a 10K drive, it will often have less capacity. The sequential read / write performance of hard disk drives is often between 150-200MB/s. As such, a RAID configuration may be a cost effective alternative to a single solid state drive for sequential read / write access.

The capacity of enterprise hard disk drives (4TB) is often greater than that of enterprise solid state drives.

Data Structure
Hash Table

JBoss Data Grid is an in-memory data grid with the data stored in a hash table. However, JBoss Data Grid supports persistence via write-behind or write-through. For all intents and purposes (e.g. map / reduce), all of the data should fit in memory.

Access

  • Random Reads, Random Writes

Riak is a key / value store. If persistence has been configured with Bitcast, the data is stored in a log structured hash table. An in-memory hash table contains the key / value pointers. The value is a pointer to the data. As such, all of the key / value pointers must fit in memory. The data is persisted via append only log files.

Access

  • Complex Index in Memory
  • Random Reads, Sequential Writes

Point queries perform well in hash tables. Range queries do not. Though there is always map / reduce.

B-Tree
MongoDB is a document database with the data stored in a B-Tree. The data is persisted via memory mapped files.

Access

  • Partial Index (Internal Nodes) in Memory
  • Random Reads, Sequential Reads, Random Writes

CouchDB is a document database with the data stored in a B+Tree. The data is persisted via append only log files.

Access

  • Partial Index in Memory
  • Random Reads, Sequential Reads, Sequential Writes

In a B+ Tree, the data is only stored in the leaf nodes. In a B-Tree, the data is stored in both the internal nodes and the leaf nodes. The advantage of a B+ Tree is that the leaf nodes are linked. As a result, range queries perform better with a B+ Tree. However, point queries perform better with a B-Tree.

CouchDB has implemented an append only B+ Tree. An alternative is the copy-on-write (CoW) B+ Tree. A write optimization for a B-Tree is buffering. First, the data written to an internal buffer in an internal node. Second, the buffer is flushed to a leaf node. As a result, random writes are turned in to sequential writes. The cost of random writes is thus amortized.  However, I am not aware of any open source data stores that have implemented a CoW B+ Tree or have implemented buffering with a B-Tree.

Range queries perform well with a B/B+ Tree. Point queries, not as well as hash tables.

Log Structured Merge Tree
Apache HBase and Apache Cassandra are both column oriented data stores, and they have both store data in an LSM-Tree. Apache HBase has implemented a cache oblivious lookahead array (COLA). Apache Cassandra has implemented a sorted array merge tree (SAMT).

In both implementations, a write is first written to a write-ahead log. Next, it is written to a memtable. A memtable is an in-memory sorted string table (SSTable). Later, the memtable is flushed and persisted as an SSTable. As result, random writes are turned in to sequential writes. However, a point query with an LSM-Tree may require multiple random reads.

Apache HBase implemented a single-level index with HFile version 1. However, because every index was cached, it resulted in high memory usage.

Apache HBase implemented a multi-level index a la a B+ Tree with HFile (SSTable) version 2. The SSTable contains a root index, a root index with leaf indexes, or a root index with an intermediate index and leaf indexes. The root index is stored in memory. The intermediate and leaf indexes may be stored in the block cache. In addition, the SSTable contains a compound (block level) bloom filter. The bloom filter is used to determine if the data is not in the data block.

Recommendation / Access

  • Partial Index / Bloom Filter in Memory
  • Random Reads, Sequential Reads, Sequential Writes

A read optimization for an LSM-Tree is fractional cascading. The idea is that each level contains both data and pointers to data in the next level. However, I am not aware of any open source data stores that have implemented fractional cascading.

I like the idea of a hybrid / tiered storage solution for an LSM-Tree implementation with the first level in memory, second level on solid state drives, and third level on hard disk drives. I've seen this solution described in academia, but I am not aware of any open source implementations.

Conclusion
I find it interesting that key / value stores often store data in a hash table, that document stores often store data in a B+/B-Tree, and that column oriented stores often store data in an LSM-Tree. Perhaps it is because key / value stores focus on the performance of point queries, document stores support secondary indexes (MongoDB) / views  (CouchDB), and column oriented stores support range queries. Perhaps it because document stores were not created with distribution (shards / partitions) in mind and thus assume that the complete index can not be stored in memory.

Notes
I found this paper to be very helpful in examining data structures as it covers most of the ones highlighted in this post:

Efficient, Scalable, and Versatile Application and System Transaction Management for Direct Storage Layers (link)

Read the original blog entry...

More Stories By Daniel Thompson

I curate the content on this page, but the credit goes to my talented colleagues for the posts that you see here. Much of what you read on this page is the work of friends at How to JBoss, and I encourage you to drop by the site at http://www.howtojboss.com for some of the best JBoss technical and non-technical content for developers, architects and technology executives on the Web.

@ThingsExpo Stories
The Internet of Things is not new. Historically, smart businesses have used its basic concept of leveraging data to drive better decision making and have capitalized on those insights to realize additional revenue opportunities. So, what has changed to make the Internet of Things one of the hottest topics in tech? In his session at @ThingsExpo, Chris Gray, Director, Embedded and Internet of Things, discussed the underlying factors that are driving the economics of intelligent systems. Discover how hardware commoditization, the ubiquitous nature of connectivity, and the emergence of Big Data a...
Health care systems across the globe are under enormous strain, as facilities reach capacity and costs continue to rise. M2M and the Internet of Things have the potential to transform the industry through connected health solutions that can make care more efficient while reducing costs. In fact, Vodafone's annual M2M Barometer Report forecasts M2M applications rising to 57 percent in health care and life sciences by 2016. Lively is one of Vodafone's health care partners, whose solutions enable older adults to live independent lives while staying connected to loved ones. M2M will continue to gr...
SYS-CON Events announced today that MetraTech, now part of Ericsson, has been named “Silver Sponsor” of SYS-CON's 16th International Cloud Expo®, which will take place on June 9–11, 2015, at the Javits Center in New York, NY. Ericsson is the driving force behind the Networked Society- a world leader in communications infrastructure, software and services. Some 40% of the world’s mobile traffic runs through networks Ericsson has supplied, serving more than 2.5 billion subscribers.
Explosive growth in connected devices. Enormous amounts of data for collection and analysis. Critical use of data for split-second decision making and actionable information. All three are factors in making the Internet of Things a reality. Yet, any one factor would have an IT organization pondering its infrastructure strategy. How should your organization enhance its IT framework to enable an Internet of Things implementation? In this session, James Kirkland, Red Hat's Chief Architect for the Internet of Things and Intelligent Systems, will describe how to revolutionize your architecture and...
The 4th International Internet of @ThingsExpo, co-located with the 17th International Cloud Expo - to be held November 3-5, 2015, at the Santa Clara Convention Center in Santa Clara, CA - announces that its Call for Papers is open. The Internet of Things (IoT) is the biggest idea since the creation of the Worldwide Web more than 20 years ago.
The enterprise market will drive IoT device adoption over the next five years. In his session at @ThingsExpo, John Greenough, an analyst at BI Intelligence, division of Business Insider, will analyze how companies will adopt IoT products and the associated cost of adopting those products. John Greenough is the lead analyst covering the Internet of Things for BI Intelligence- Business Insider’s paid research service. Numerous IoT companies have cited his analysis of the IoT. Prior to joining BI Intelligence, he worked analyzing bank technology for Corporate Insight and The Clearing House Pay...
As the Internet of Things unfolds, mobile and wearable devices are blurring the line between physical and digital, integrating ever more closely with our interests, our routines, our daily lives. Contextual computing and smart, sensor-equipped spaces bring the potential to walk through a world that recognizes us and responds accordingly. We become continuous transmitters and receivers of data. In his session at @ThingsExpo, Andrew Bolwell, Director of Innovation for HP's Printing and Personal Systems Group, discussed how key attributes of mobile technology – touch input, sensors, social, and ...
SYS-CON Events announced today that BMC will exhibit at SYS-CON's 16th International Cloud Expo®, which will take place on June 9-11, 2015, at the Javits Center in New York City, NY. BMC delivers software solutions that help IT transform digital enterprises for the ultimate competitive business advantage. BMC has worked with thousands of leading companies to create and deliver powerful IT management services. From mainframe to cloud to mobile, BMC pairs high-speed digital innovation with robust IT industrialization – allowing customers to provide amazing user experiences with optimized IT per...
The world is at a tipping point where the technology, the device and global adoption are converging to such a point that we will see an explosion of a world where smartphone devices not only allow us to talk to each other, but allow for communication between everything – serving as a central hub from which we control our world – MediaTek is at the heart of both driving this and allowing the markets to drive this reality forward themselves. The next wave of consumer gadgets is here – smart, connected, and small. If your ambitions are big, so are ours. In his session at @ThingsExpo, Jack Hu, D...
All major researchers estimate there will be tens of billions devices - computers, smartphones, tablets, and sensors - connected to the Internet by 2020. This number will continue to grow at a rapid pace for the next several decades. With major technology companies and startups seriously embracing IoT strategies, now is the perfect time to attend @ThingsExpo, June 9-11, 2015, at the Javits Center in New York City. Learn what is going on, contribute to the discussions, and ensure that your enterprise is as "IoT-Ready" as it can be
The multi-trillion economic opportunity around the "Internet of Things" (IoT) is emerging as the hottest topic for investors in 2015. As we connect the physical world with information technology, data from actions, processes and the environment can increase sales, improve efficiencies, automate daily activities and minimize risk. In his session at @ThingsExpo, Ed Maguire, Senior Analyst at CLSA Americas, will describe what is new and different about IoT, explore financial, technological and real-world impact across consumer and business use cases. Why now? Significant corporate and venture...
Today’s enterprise is being driven by disruptive competitive and human capital requirements to provide enterprise application access through not only desktops, but also mobile devices. To retrofit existing programs across all these devices using traditional programming methods is very costly and time consuming – often prohibitively so. In his session at @ThingsExpo, Jesse Shiah, CEO, President, and Co-Founder of AgilePoint Inc., discussed how you can create applications that run on all mobile devices as well as laptops and desktops using a visual drag-and-drop application – and eForms-buildi...
The Internet of Things is not only adding billions of sensors and billions of terabytes to the Internet. It is also forcing a fundamental change in the way we envision Information Technology. For the first time, more data is being created by devices at the edge of the Internet rather than from centralized systems. What does this mean for today's IT professional? In this Power Panel at @ThingsExpo, moderated by Conference Chair Roger Strukhoff, panelists will addresses this very serious issue of profound change in the industry.
WebRTC defines no default signaling protocol, causing fragmentation between WebRTC silos. SIP and XMPP provide possibilities, but come with considerable complexity and are not designed for use in a web environment. In his session at @ThingsExpo, Matthew Hodgson, technical co-founder of the Matrix.org, discussed how Matrix is a new non-profit Open Source Project that defines both a new HTTP-based standard for VoIP & IM signaling and provides reference implementations.
SYS-CON Events announced today that O'Reilly Media has been named “Media Sponsor” of SYS-CON's 16th International Cloud Expo®, which will take place on June 9–11, 2015, at the Javits Center in New York City, NY. O'Reilly Media spreads the knowledge of innovators through its books, online services, magazines, and conferences. Since 1978, O'Reilly Media has been a chronicler and catalyst of cutting-edge development, homing in on the technology trends that really matter and spurring their adoption by amplifying "faint signals" from the alpha geeks who are creating the future. An active participa...
"People are a lot more knowledgeable about APIs now. There are two types of people who work with APIs - IT people who want to use APIs for something internal and the product managers who want to do something outside APIs for people to connect to them," explained Roberto Medrano, Executive Vice President at SOA Software, in this SYS-CON.tv interview at Cloud Expo, held Nov 4–6, 2014, at the Santa Clara Convention Center in Santa Clara, CA.
There will be 150 billion connected devices by 2020. New digital businesses have already disrupted value chains across every industry. APIs are at the center of the digital business. You need to understand what assets you have that can be exposed digitally, what their digital value chain is, and how to create an effective business model around that value chain to compete in this economy. No enterprise can be complacent and not engage in the digital economy. Learn how to be the disruptor and not the disruptee.
2015 predictions circa 1970: houses anticipate our needs and adapt, city infrastructure is citizen and situation aware, office buildings identify and preprocess you. Today smart buildings have no such collective conscience, no shared set of fundamental services to identify, predict and synchronize around us. LiveSpace and M2Mi are changing that. LiveSpace Smart Environment devices deliver over the M2Mi IoT Platform real time presence, awareness and intent analytics as a service to local connected devices. In her session at @ThingsExpo, Sarah Cooper, VP Business of Development at M2Mi, will d...
Thanks to widespread Internet adoption and more than 10 billion connected devices around the world, companies became more excited than ever about the Internet of Things in 2014. Add in the hype around Google Glass and the Nest Thermostat, and nearly every business, including those from traditionally low-tech industries, wanted in. But despite the buzz, some very real business questions emerged – mainly, not if a device can be connected, or even when, but why? Why does connecting to the cloud create greater value for the user? Why do connected features improve the overall experience? And why do...
Almost everyone sees the potential of Internet of Things but how can businesses truly unlock that potential. The key will be in the ability to discover business insight in the midst of an ocean of Big Data generated from billions of embedded devices via Systems of Discover. Businesses will also need to ensure that they can sustain that insight by leveraging the cloud for global reach, scale and elasticity.